Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891649.1_cds_XP_016446497.1_41346
CDS Infomation

[gene=LOC107771601] [db_xref=GeneID:107771601] [protein=short-chain dehydrogenase/reductase family 42E member 1-like] [protein_id=XP_016446497.1] [location=join(8099..8288,8766..9108,9931..10202,10407..10603,11753..12187)] [gbkey=CDS]
Sequence

ATGCATCTGAGCGAGAACGAAGGGATAGAGAACAATAGTTTCGTAGTGACCGGTGGACTA
GGCTTCGTAGGCTCCGCACTTTGTCTTGAGCTCGTCAGAAGGGGTGCTCGTATTGTTAAG
GCCTTTGATCTTCGTACCCATTCTCCTTGGTCTCATCAACTCCGTCAAAATGGGGTTCAT
TTCATCCAAGGGGATATAACAGACAAACAAGATGTCCAGAAAGCACTACGAGGGGCAGAT
TGTGTTTTCCATCTTGCTTCCTATGGCATGTCGGGGAAAGAAATGCTCCAATATCGTCGT
GTTGATGAGGTTAATATAAATGGAACCTGTCACATTATTGATACTTGCGTTGAGCATCAG
ATTAAGAGGCTTGTTTATGTGAGCACATGTAATGTCGTTTATGGTGGTAAGGAAATCGTT
AATGGCAATGAAAATCTACCTTATTTCCCTGTTGATGACCATGTTGATCCATATGGACGC
AGCAAATCCATCGCTGAGCAATTAGTCCTAAAGAGCAATGGTCGTCCCTTCAATAAGAAA
AATGGAAAATGCCTTTACACCTGTGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAA
GAAAGGCACCTGCCGAGGATCATAACTCTTGCAAAGTTAGGTCTGCTTCCGTTCAAAATT
GGTTCACCAAATGTGAAATCAGATTGGGTGTACGTGGACAATCTTGTATTGGCACTTCTA
TTGGCTAGCATGGGACTTTTGGATGACATCCCTGGCAGAAAAGGGCATCCAGTTGCTGCT
GGTCAACCTTATTTTATATCAGATGGGTCTCCGATCAACAGTTTTGAGTTCCTTCGCCCT
TTACTGAAAAGCCTGGACTACGACCTACCAAAGACATCACTAACTGTCTCTCAAGCTCTT
CTTCTGGGAAATTTTTTCTGGGCCTTGTACTCCATCTTGCATCCTTGGTTAAATCGTAGC
TGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTATAAGGTTGGTGTCACTCATTAC
TTCTCATTTCTAAAAGCAAAGGAGGAACTTGGATACATCCCACTAGTGAGTTCCAAGGAG
GGTATGGCTGCAACCATCGCATATTGGCAAGAAAGAAAAAGGAGGAGTTTGGATGGACCT
ACAATATGGACATGGCTGTTTTGTGCGATTGGAATGTTATCGTTGTTTGGTGCTGCATAC
TTGCCGGATTATGGACCCATTCCCTTTGTTAGAGCAATTGGCCTCTTCTTCTTTCGCTCT
ATGTTGGCATTGAAAGTGATGTTTGTTCTAGCAGCTACAGCACATGCAGGTGAAGCTATA
TATGCATGGAATCTTGCAAAAACAGTAGATCCTGCAAATGCAAAAGCATGGTTTTGGCAG
ACATTTGCTTTGGGGGTATTTTCCCTAAGATTCCTGCTGAAGAGAGCTCAAAAGTAG

Peptide Sequence

PEP ID

XP_016446497.1
PEP Infomation

PREDICTED: short-chain dehydrogenase/reductase family 42E member 1-like [Nicotiana tabacum]
Sequence

MHLSENEGIENNSFVVTGGLGFVGSALCLELVRRGARIVKAFDLRTHSPWSHQLRQNGVH
FIQGDITDKQDVQKALRGADCVFHLASYGMSGKEMLQYRRVDEVNINGTCHIIDTCVEHQ
IKRLVYVSTCNVVYGGKEIVNGNENLPYFPVDDHVDPYGRSKSIAEQLVLKSNGRPFNKK
NGKCLYTCAIRPAAIYGPGEERHLPRIITLAKLGLLPFKIGSPNVKSDWVYVDNLVLALL
LASMGLLDDIPGRKGHPVAAGQPYFISDGSPINSFEFLRPLLKSLDYDLPKTSLTVSQAL
LLGNFFWALYSILHPWLNRSWLPQPLILPAEVYKVGVTHYFSFLKAKEELGYIPLVSSKE
GMAATIAYWQERKRRSLDGPTIWTWLFCAIGMLSLFGAAYLPDYGPIPFVRAIGLFFFRS
MLALKVMFVLAATAHAGEAIYAWNLAKTVDPANAKAWFWQTFALGVFSLRFLLKRAQK

Transcript Sequence

Gene sequence data has not been registered.